† equal contribution; ∗ student advisee
A Goyal, LS Bittleston, GE Leventhal, L Lu, OX Cordero
Interactions between strains govern the eco-evolutionary dynamics of microbial communities
Submitted
E Katkeviciute, L Hering,, A Montalban-Arques, P Busenhart, JC Aranda, K Atrott, S Lang, G Rogler, E Naschberger, VS Schellerer, M Stürzl, A Rickenbacher, M Turina, A Weber, S Leibl, GE Leventhal, M Levesque, O Boyman, M Scharl, MR Spalinger
Protein tyrosine phosphatase nonreceptor type 2 controls colorectal cancer development
T Hackl, R Laurenceau, MJ Ankenbrand, C Bliem, Z Cariani, E Thomas, KD Dooley, AA Arellano, SL Hogle, P Berube, GE Leventhal, E Luo, J Eppley, AA Zayed, J Beaulaurier, R Stepanauskas, MB Sullivan, EF DeLong, SJ Biller, SW Chisholm
Novel integrative elements and genomic plasticity in ocean ecosystems
LS Bittleston, M Gralka, GE Leventhal, I Mizrahi, OX Cordero
Context-dependent dynamics lead to the assembly of functionally distinct pitcher-plant microbiomes
MR Spalinger, M Schwarzfischer, L Hering, A Shawki, A Sayoc, A Santos, C Gottier, S Lang, K Bäbler, A Geirnaert, C Lacroix, GE Leventhal, X Dai, D Rawlings, AA Chan, G Rogler, DF McCole, M Scharl
Loss of PTPN22 abrogates the beneficial effect of cohousing-mediated fecal microbiota transfer in murine colitis
TG Vaughan†, GE Leventhal†, DA Rasmussen, AJ Drummond, D Welch, T Stadler
Estimating epidemic incidence and prevalence from genomic data
GE Leventhal, M Ackermann, K Schiessl
Why microbes secrete molecules to modify their environment: the case of iron-chelating siderophores
GE Leventhal, C Boix∗, U Kuechler, T Enke, E Sliwerska, C Holliger, OX Cordero
Strain-level diversity drives alternative community types in millimetre-scale granular biofilms
TN Enke, GE Leventhal, M Metzger, J Saavedra, OX Cordero
Microscale ecology regulates particulate organic matter turnover in model marine microbial communities
JI Liechti, GE Leventhal, S Bonhoeffer
Host population structure impedes reversion to drug sensitivity after discontinuation of treatment
F Bertels, A Marzel, GE Leventhal, V Mitov, J Fellay, HF Günthard, J Böni, S Yerly, T Klimkait, V Aubert, M Battegay, A Rauch, M Cavassini, A Calmy, E Bernasconi, P Schmid, A Scherrer, V Müller, S Bonhoeffer, RD Kouyos, RR Regoes
Dissecting HIV Virulence: Heritability Of Setpoint Viral Load, CD4+ T Cell Decline And Per-Parasite Pathogenicity
N Bachmann, T Turk, C Kadelka, A Marzel, M Shilaih, J Böni, V Aubert, T Klimkait, GE Leventhal, HF Günthard, RD Kouyos
Parent-offspring regression to estimate the heritability of an HIV-1 trait in a realistic setup
O Ratmann, EB Hodcroft, M Pickles, A Cori, M Hall, S Lycett, C Colijn, B Dearlove, X Didelot, S Frost, A Hossain, JB Joy, M Kendall, D Kühnert, GE Leventhal, R Liang, G Plazzotta, AF Poon, DA Rasmussen, T Stadler, E Volz, C Weis, AJ Leigh Brown, C Fraser
Phylogenetic Tools for Generalized HIV-1 Epidemics: Findings from the PANGEA-HIV Methods Comparison
W Delva, GE Leventhal, S Helleringer
Connecting the dots: network data and models in HIV epidemiology
L du Plessis, GE Leventhal, S Bonhoeffer
How good are statistical models at approximating complex fitness landscapes?
GE Leventhal, S Bonhoeffer
Potential pitfalls in estimating viral load heritability
T Stadler, TG Vaughan, A Gavryushkin, S Guindon, D Kühnert, GE Leventhal, AJ Drummond
How well can the exponential-growth coalescent approximate constant-rate birth–death population dynamics?
S Bonhoeffer, C Fraser, GE Leventhal
Heritability and the distribution of set point viral load in HIV carriers
GE Leventhal†, AL Hill†, M Nowak, S Bonhoeffer
Evolution and emergence of infectious diseases in theoretical and real-world networks
GE Leventhal†, L Wang†, RD Kouyos
Real-world Interaction Networks Buffer Impact of Small Evolutionary Shifts On Biodiversity
C Fraser, K Lythgoe, GE Leventhal, G Shirreff, TD Hollingsworth, S Alizon, S Bonhoeffer
Virulence and Pathogenesis of HIV-1 Infection: An Evolutionary Perspective
GE Leventhal†, SR Dünner†,∗, S Barribeau
Delayed virulence and limited costs promote fecundity compensation upon infection
GE Leventhal, H Günthard, S Bonhoeffer, T Stadler
Using an epidemiological model for phylogenetic inference reveals density-dependence in HIV transmission
A Hool†,∗, GE Leventhal†, S Bonhoeffer
Virus-induced target cell activation reconciles set-point viral load heritability and within-host evolution
RD Kouyos, GE Leventhal, T Hinkley, M Haddad, J Whitcomb, C Petropoulos, S Bonhoeffer
Exploring the Complexity of the HIV-1 Fitness Landscape
GE Leventhal, RD Kouyos, T Stadler, VV Wyl, S Yerly, J Böni, C Cellerai, T Klimkait, HF Günthard, S Bonhoeffer
Inferring Epidemic Contact Structure from Phylogenetic Trees